PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00122144001
Common NameGSBRNA2T00122144001, LOC106419809
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 326aa    MW: 36002.9 Da    PI: 6.0011
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00122144001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.57.7e-10133182554
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                          kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l   + 
  GSBRNA2T00122144001 133 KRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLFQR 182
                          9****************************************998876665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-16129193IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.909131194IPR004827Basic-leucine zipper domain
PfamPF001703.6E-8133181IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-10133184No hitNo description
Gene3DG3DSA:1.20.5.1706.5E-10133188No hitNo description
CDDcd147036.30E-22134183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEKPDPQPPN AADPIPSSFH RRSRSDDMSM FMFMDPLSSS GPPPSSDDLP SDDDLFSSFI  60
DVDSLSSNPH PTTIAFPNHH AAANSVPSSS SRPRHRHSNS VDAGCAMYAN EIMDAKKAMP  120
PEKLSELWNV DPKRAKRILA NRQSAARSKE RKARYIQELE RKVQSLQTEA TTLSAQLTLF  180
QRDTNGLANE NTELKLRLQA MEQQAHLRNA LNEALRKELE RMKIETGEIS GNSDSFDMGM  240
QQVQYSPSTY MAIPPYHHGA INNGQDMQQM HGYNPMEAMS NSQSVSEFLQ NGRLQGLEIS  300
SNNNSSSLVK SEGPSLSASE SSSAY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00122144001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0110013e-43AC011001.2 Arabidopsis thaliana chromosome I BAC F4H5 genomic sequence, complete sequence.
GenBankAJ4198523e-43AJ419852.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBankAJ4198533e-43AJ419853.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor.
GenBankAY0624743e-43AY062474.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850; F4H5.7) mRNA, complete cds.
GenBankBT0001023e-43BT000102.1 Arabidopsis thaliana Similar to bZIP transcription factors (At1g06850) mRNA, complete cds.
GenBankCP0026843e-43CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716099.10.0PREDICTED: transcription factor RF2b
SwissprotQ6S4P42e-82RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A078EYK00.0A0A078EYK0_BRANA; BnaA09g49720D protein
STRINGBra031541.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135551727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.11e-121basic leucine-zipper 52
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]